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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149150516_149151111_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149150516 - 149151111
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATTCTCAATC
Flanking Amino Acid:
VTLLLFFLCKRYCSFKRVFP
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
67.7
0.4
1.1
68
37
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
67.7
0.54
1.5
75.19
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035943
149140580 - 149153521
12942