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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149151194_149153284_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
149151194 - 149153284
Intron Length:
2091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
CTTTCCCCAAGT
Flanking Amino Acid:
FNTSHDENIQTENMFPSSLS
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
67.7
0.44
1
58
38.9
Major PPT
85.5
0.8
0.6
85.3
22
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
50.6
0.1
2.2
76.94
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035943
149140580 - 149153521
12942