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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149155981_149156460_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149155981 - 149156460
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TCTTTTTCTACA
Flanking Amino Acid:
RMMMQSGRKGADIMYSGTID
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
92
0.95
0.6
87.6
22.8
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
50.9
0.02
1.8
66.46
40.2

Associated Gene:

Gene:
SLC25A6
Ensembl Gene ID:
ENSAPLG00000012323
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012833
149155747 - 149217192
61446
ENSAPLT00000023901
149155322 - 149158877
3556
ENSAPLT00000017906
149155738 - 149217192
61455