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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149168226_149169268_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149168226 - 149169268
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTCT
5'SS Class:
strong_major
3'SS Sequence:
AAACTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGATTTTGACT
Flanking Amino Acid:
SQFKSTCDLGGCTGALAHEL
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.9
0.34
1
59.2
40.7
Minor 5ss
45.5
-0.5
3.1
65.3
46.1
Minor BPS
66
0.59
1.3
78.82
37.8

Associated Gene:

Gene:
ASMTL
Ensembl Gene ID:
ENSAPLG00000009849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010285
149166042 - 149188690
22649
ENSAPLT00000043280
149161478 - 149189038
27561
ENSAPLT00000028144
149166042 - 149188690
22649