About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149169399_149170657_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149169399 - 149170657
Intron Length:
1259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATGAC
U12 Branch Point Sequence:
ATGCCAATGACT
Flanking Amino Acid:
FGRKAEDLFKDYYHSQEVKQ
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
54.6
0.12
1.1
47.1
36.1
Major PPT
82.7
0.74
0.6
81.8
23
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
48.4
-0
1.9
69.64
40.7

Associated Gene:

Gene:
ASMTL
Ensembl Gene ID:
ENSAPLG00000009849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043280
149161478 - 149189038
27561
ENSAPLT00000028144
149166042 - 149188690
22649
ENSAPLT00000010285
149166042 - 149188690
22649