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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149172123_149175123_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149172123 - 149175123
Intron Length:
3001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTACATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCTACATA
Flanking Amino Acid:
DLMDGFKASKALFVASKLKV
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.6
0.49
0.9
66.3
33.8
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
61.1
0.34
2.1
78.78
38.5

Associated Gene:

Gene:
ASMTL
Ensembl Gene ID:
ENSAPLG00000009849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043280
149161478 - 149189038
27561
ENSAPLT00000028144
149166042 - 149188690
22649
ENSAPLT00000010285
149166042 - 149188690
22649