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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149175551_149180556_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149175551 - 149180556
Intron Length:
5006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTAACTTCATAG
Flanking Amino Acid:
LWEYIHSGEPMDKAGGYGIQ
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
80.8
0.69
0.7
73.4
31.6
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
44.2
-0.5
1.9
50.77
43

Associated Gene:

Gene:
ASMTL
Ensembl Gene ID:
ENSAPLG00000009849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043280
149161478 - 149189038
27561
ENSAPLT00000010285
149166042 - 149188690
22649