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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149185714_149187393_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149185714 - 149187393
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TATGCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATG
Flanking Amino Acid:
ALEVANRMHVKHLRTPDIVI
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
73.9
30.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.1
0.68
0.9
73.5
36.6
Minor 5ss
42.3
-0.8
2.8
54.2
38.3
Minor BPS
62.3
0.24
1.7
66.64
41.8

Associated Gene:

Gene:
ASMTL
Ensembl Gene ID:
ENSAPLG00000009849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043280
149161478 - 149189038
27561
ENSAPLT00000028144
149166042 - 149188690
22649
ENSAPLT00000010285
149166042 - 149188690
22649