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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149187526_149188597_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149187526 - 149188597
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAACAT
U12 Branch Point Sequence:
TTCTTTGTTACA
Flanking Amino Acid:
PRRQEILTNVGLRFEVVPSW
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
49.8
-0
1.1
57.3
37.7
Major PPT
87.9
0.85
0.8
83.2
32
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
47.6
-0.2
2.2
65.81
41.1

Associated Gene:

Gene:
ASMTL
Ensembl Gene ID:
ENSAPLG00000009849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043280
149161478 - 149189038
27561
ENSAPLT00000028144
149166042 - 149188690
22649
ENSAPLT00000010285
149166042 - 149188690
22649