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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14925893_14927002_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14925893 - 14927002
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TACTTGTTCACT
Flanking Amino Acid:
YNATVFAYGQTGAGKTYTMG
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
77.3
0.62
0.8
75.5
34.3
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
48.4
-0
2.4
72.02
45.1

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808
ENSAPLT00000015043
14896432 - 14983050
86619
ENSAPLT00000045930
14883243 - 14983050
99808
ENSAPLT00000039698
14883243 - 14983050
99808