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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149289487_149290175_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149289487 - 149290175
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
GGTTGCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCATGCTAATA
Flanking Amino Acid:
LCWHYLTDAVREGRNQYERA
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
67.9
0.4
1
63.5
42.8
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
44.7
-0.4
2.3
59.85
40.6

Associated Gene:

Gene:
ASMT
Ensembl Gene ID:
ENSAPLG00000010447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010893
149286591 - 149293650
7060