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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149290862_149291577_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
149290862 - 149291577
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCTCACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTCAG
U12 Branch Point Sequence:
TGTTTCAGCACT
Flanking Amino Acid:
SSFTRIYDLGGGGGALAREC
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
58.3
0.21
1.7
71.4
45.1
Major PPT
51.7
0.04
1
49.3
33.1
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
47.7
-0.1
2.2
74.41
42

Associated Gene:

Gene:
ASMT
Ensembl Gene ID:
ENSAPLG00000010447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010893
149286591 - 149293650
7060