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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149292862_149293158_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149292862 - 149293158
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
TTTATTCAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTTTTCTGAATT
Flanking Amino Acid:
LAKVHQACRPGGGVLLVESL
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
67.4
44
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
73.7
0.53
1
67.9
42.5
Minor 5ss
35.4
-1.7
3.6
49
47.2
Minor BPS
71.4
0.75
1.4
84.15
37

Associated Gene:

Gene:
ASMT
Ensembl Gene ID:
ENSAPLG00000010447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010893
149286591 - 149293650
7060