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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14935542_14939529_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14935542 - 14939529
Intron Length:
3988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTAACTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATGTTTGTAACT
Flanking Amino Acid:
RLLQDSLGGNSQTLMIACVS
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
69.4
37.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77.6
0.62
0.9
70.7
39.8
Minor 5ss
27.5
-2.6
3.6
37.2
47.4
Minor BPS
57.9
0.32
2
77.17
40

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015043
14896432 - 14983050
86619
ENSAPLT00000045930
14883243 - 14983050
99808
ENSAPLT00000039698
14883243 - 14983050
99808
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808