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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14940627_14941309_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14940627 - 14941309
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CCCACACTCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTGTTATTATTT
Flanking Amino Acid:
DQANQVLARAGEGNEEISNM
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.4
41.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
52.7
0.06
1
48.3
33.2
Minor 5ss
55.9
0.2
2.5
73.6
43
Minor BPS
49.5
0.04
1.9
68
43.6

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808
ENSAPLT00000015043
14896432 - 14983050
86619
ENSAPLT00000045930
14883243 - 14983050
99808
ENSAPLT00000039698
14883243 - 14983050
99808