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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14945385_14947546_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14945385 - 14947546
Intron Length:
2162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGAATA
5'SS Class:
major
3'SS Sequence:
CCTCTTCTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
AGTTTATGAATA
Flanking Amino Acid:
KLEESSQEERSVKDDNTDNE
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
72.9
38.1
Major BPS
75.5
0.63
1
66
40.9
Major PPT
70.5
0.46
0.9
65.2
36.3
Minor 5ss
32
-2.1
3.1
40.5
45.3
Minor BPS
52.1
0.06
1.7
64.58
35.2

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015043
14896432 - 14983050
86619
ENSAPLT00000045930
14883243 - 14983050
99808
ENSAPLT00000039698
14883243 - 14983050
99808
ENSAPLT00000034605
14883243 - 14983050
99808