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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149474997_149478622_R

Intron Information:

Intron Rank:
151306
Intron Class:
major
Intron Phase:
Intron Coordinates:
149474997 - 149478622
Intron Length:
3626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAG
U12 Branch Point Sequence:
TGTGAGAGGACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
49.4
-0
1.6
48.8
46.3
Major PPT
89
0.88
0.6
84.5
23.3
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
34
-1.4
2.3
42.14
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040488
149474474 - 149483731
9258