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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14950533_14950954_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14950533 - 14950954
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTC
5'SS Class:
strong_major
3'SS Sequence:
GACTTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
GCTTTTCTAAGT
Flanking Amino Acid:
QEVTEMKKTKVRLMKQMKEE
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
77.3
31.9
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
74.7
0.56
0.9
68.2
37.2
Minor 5ss
50.8
0.03
2.5
69.7
41.2
Minor BPS
49.1
0.01
1.9
68.31
43

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039698
14883243 - 14983050
99808
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808
ENSAPLT00000015043
14896432 - 14983050
86619
ENSAPLT00000045930
14883243 - 14983050
99808