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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149515791_149525923_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149515791 - 149525923
Intron Length:
10133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTGTTCTGAATC
Flanking Amino Acid:
IWMTAWLFLKVYLFLFHDEG
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.2
39.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.2
0.79
0.6
85.4
21.9
Minor 5ss
40.9
-1
3.7
63.6
48.1
Minor BPS
68.4
0.56
1.4
74.63
36.3

Associated Gene:

Gene:
ZBED1
Ensembl Gene ID:
ENSAPLG00000011428
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011506
149515644 - 149664081
148438