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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149526132_149542137_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149526132 - 149542137
Intron Length:
16006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGATC
5'SS Class:
major
3'SS Sequence:
CTCTTGTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCTCTTGTATA
Flanking Amino Acid:
GKLHLNDLQSRCSYSPHGAY
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
69.9
40.6
Major BPS
100
1.24
0.5
100
0
Major PPT
77.5
0.62
0.9
72
37.2
Minor 5ss
35.8
-1.6
3.4
51.8
45
Minor BPS
48.4
-0.1
1.8
59.09
41.8

Associated Gene:

Gene:
ZBED1
Ensembl Gene ID:
ENSAPLG00000011428
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029741
149496619 - 149664081
167463
ENSAPLT00000011506
149515644 - 149664081
148438
ENSAPLT00000031872
149496619 - 149664081
167463