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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149542346_149558017_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149542346 - 149558017
Intron Length:
15672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTCCCTGTACT
Flanking Amino Acid:
NCPLHVLVNNAGVMLVPERK
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
84.6
0.78
0.7
76.4
32.2
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
65.7
0.57
1.8
87.16
37.7

Associated Gene:

Gene:
ZBED1
Ensembl Gene ID:
ENSAPLG00000011428
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031872
149496619 - 149664081
167463
ENSAPLT00000029741
149496619 - 149664081
167463
ENSAPLT00000011506
149515644 - 149664081
148438