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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149558120_149614813_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149558120 - 149614813
Intron Length:
56694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAATATA
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTGTTCATCT
Flanking Amino Acid:
TGKGHCKRAGLEFLYCDLAS
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
73.7
36.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
41.6
-0.9
3
60.7
43.8
Minor BPS
51
0.11
2.2
79.81
42.6

Associated Gene:

Gene:
ZBED1
Ensembl Gene ID:
ENSAPLG00000011428
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029741
149496619 - 149664081
167463