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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14956586_14957100_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14956586 - 14957100
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
CTGTTATTACAC
Flanking Amino Acid:
LDALLGHALQDLDSIPLENL
Intron Amino Acid Position:
1106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
74.5
0.55
1
69.1
40.7
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
45.8
-0.3
1.9
55.85
42.6

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039698
14883243 - 14983050
99808
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808
ENSAPLT00000015043
14896432 - 14983050
86619