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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14957122_14961053_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14957122 - 14961053
Intron Length:
3932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GGTGATTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTAGAT
U12 Branch Point Sequence:
TTTTGGTGATTT
Flanking Amino Acid:
ALQDLDSIPLENLEDSTDED
Intron Amino Acid Position:
1113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
81.8
38.5
Major BPS
64
0.35
1.2
60.7
45.9
Major PPT
68.3
0.41
1
58.4
47
Minor 5ss
38.9
-1.2
2.8
43.3
43.8
Minor BPS
43.7
-0.4
2.6
72.32
45

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039698
14883243 - 14983050
99808
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808
ENSAPLT00000015043
14896432 - 14983050
86619