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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14961115_14961318_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14961115 - 14961318
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTCTTGCTAACT
Flanking Amino Acid:
APLHSPGTEGSSLSSDLLKL
Intron Amino Acid Position:
1133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
83.9
0.76
0.7
82.2
28.9
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
52.5
0.16
2.3
79.84
42.4

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808
ENSAPLT00000015043
14896432 - 14983050
86619
ENSAPLT00000045930
14883243 - 14983050
99808
ENSAPLT00000039698
14883243 - 14983050
99808