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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14961374_14962745_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14961374 - 14962745
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
AAATGTTTAAGT
Flanking Amino Acid:
LCGEVKPKSKARRRTTTQME
Intron Amino Acid Position:
1152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72.7
44.5
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
83.1
0.74
0.9
77.3
37
Minor 5ss
39.7
-1.2
3.2
57.4
46.9
Minor BPS
50.2
0.08
2
68.11
42.8

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015043
14896432 - 14983050
86619
ENSAPLT00000045930
14883243 - 14983050
99808
ENSAPLT00000039698
14883243 - 14983050
99808
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808