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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149615071_149627564_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149615071 - 149627564
Intron Length:
12494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAGTCA
5'SS Class:
major
3'SS Sequence:
TGTATTGTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTTCTGTATT
Flanking Amino Acid:
LARLGMHVIIAGDIESEGQE
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.8
38.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.1
0.43
1.1
64.6
45.7
Minor 5ss
35.3
-1.7
3.5
47.9
47.7
Minor BPS
56.3
0.28
1.8
77.06
39.7

Associated Gene:

Gene:
ZBED1
Ensembl Gene ID:
ENSAPLG00000011428
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031872
149496619 - 149664081
167463
ENSAPLT00000029741
149496619 - 149664081
167463
ENSAPLT00000011506
149515644 - 149664081
148438