About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149627673_149663975_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149627673 - 149663975
Intron Length:
36303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
CTTACATTATTT
Flanking Amino Acid:
GRRRRCPPPAAFPTQNGKVA
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
85.5
0.8
0.6
81.2
24.2
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
52.6
0.16
1.9
73.79
43.2

Associated Gene:

Gene:
ZBED1
Ensembl Gene ID:
ENSAPLG00000011428
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031872
149496619 - 149664081
167463
ENSAPLT00000029741
149496619 - 149664081
167463
ENSAPLT00000011506
149515644 - 149664081
148438