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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14962964_14967512_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14962964 - 14967512
Intron Length:
4549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTCCTCTTGATT
Flanking Amino Acid:
PSGLPSKIGSISRQPSLSEK
Intron Amino Acid Position:
1224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
74.8
0.56
0.9
72.6
36.6
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
68.5
0.66
1.2
79.78
36.5

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808
ENSAPLT00000015043
14896432 - 14983050
86619
ENSAPLT00000045930
14883243 - 14983050
99808
ENSAPLT00000039698
14883243 - 14983050
99808