About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14967624_14971918_F


Intron Information:

Intron Rank:
28

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
14967624 - 14971918

Intron Length:
4295

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACT|GTAAGAATC

5'SS Class:
major

3'SS Sequence:
TTTTTTTCTTTAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
AACTCAC

U12 Branch Point Sequence:
CTATGCCCAACT

Flanking Amino Acid:
MEKTKAKEQKLGIINPFPAS

Intron Amino Acid Position:
1271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.3
0.53
1.1
72.3
37.3

Major BPS
68.4
0.46
0.9
69.3
26.9

Major PPT
92.8
0.96
0.5
93.3
15.6

Minor 5ss
40.9
-1
3.1
63
41.2

Minor BPS
46.8
-0.1
2.3
69.94
46.3

Associated Gene:

Gene:
KIF21A

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

14883243 - 14983050
99808