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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14972056_14974428_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14972056 - 14974428
Intron Length:
2373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGGCAA
5'SS Class:
major
3'SS Sequence:
TGTCTTTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATTT
Flanking Amino Acid:
TDDLLFTGSKDRTCKVWNLV
Intron Amino Acid Position:
1350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
57.9
42.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.5
0.64
0.9
77.9
35.6
Minor 5ss
25
-2.9
3.2
29.6
43.3
Minor BPS
69.5
0.69
1.5
83.25
38.8

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039698
14883243 - 14983050
99808
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808
ENSAPLT00000015043
14896432 - 14983050
86619
ENSAPLT00000045930
14883243 - 14983050
99808