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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14975119_14975791_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14975119 - 14975791
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGAAC
5'SS Class:
major
3'SS Sequence:
CTTATTCTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATTC
Flanking Amino Acid:
GNSVRMWDLKRFQSTGKLTG
Intron Amino Acid Position:
1465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
66.1
39.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
74.6
0.55
1
75.4
33.2
Minor 5ss
31.6
-2.1
3.3
42.7
44.4
Minor BPS
65.7
0.47
1.6
73.26
38.6

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039698
14883243 - 14983050
99808
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808
ENSAPLT00000015043
14896432 - 14983050
86619
ENSAPLT00000045930
14883243 - 14983050
99808