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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149755726_149756164_R

Intron Information:

Intron Rank:
147396
Intron Class:
major
Intron Phase:
Intron Coordinates:
149755726 - 149756164
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATATTT
5'SS Class:
major
3'SS Sequence:
TATTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
76.2
33.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.6
0.98
0.6
92.5
25.6
Minor 5ss
44.1
-0.6
3.2
62.4
43.3
Minor BPS
49.1
0.01
1.8
68.5
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026642
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017711
149755430 - 149758013
2584