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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149777217_149778698_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
149777217 - 149778698
Intron Length:
1482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGTTTTTT
5'SS Class:
weak_major
3'SS Sequence:
AACTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATATCTGTAAAA
Flanking Amino Acid:
GGGGGGKIVVSSQGAIAGIV
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.1
64.1
35.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.3
0.68
0.8
77.2
36.1
Minor 5ss
49.4
-0
2.7
72.2
39
Minor BPS
52.6
0.08
2.1
67.84
38.3

Associated Gene:

Gene:
CD99
Ensembl Gene ID:
ENSAPLG00000011227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011698
149777009 - 149779717
2709