About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149802677_149805841_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149802677 - 149805841
Intron Length:
3165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
CTTTCATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCCCTTTCATT
Flanking Amino Acid:
VIRRPTRPLLNNDLHLGDAF
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.8
33.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.3
0.75
0.7
81.6
29.1
Minor 5ss
33.2
-1.9
2.8
38.8
40.3
Minor BPS
59.2
0.37
1.7
76.64
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011560
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012029
149802152 - 149810464
8313