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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149805878_149808308_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149805878 - 149808308
Intron Length:
2431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTACTATCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTACTATCAACA
Flanking Amino Acid:
DLHLGDAFGGGDYPRQPLYP
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
71.7
0.49
1
67
38.1
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
51.5
0.04
1.8
67.43
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011560
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012029
149802152 - 149810464
8313