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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149815624_149820646_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149815624 - 149820646
Intron Length:
5023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TATTTGCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTCTTCTGAATA
Flanking Amino Acid:
MSVTDQAFVTLA
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
71.8
39.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
83.6
0.76
0.9
77.5
36.5
Minor 5ss
31.1
-2.2
2.6
35.7
40.4
Minor BPS
61.9
0.37
1.4
67.18
40

Associated Gene:

Gene:
GYG2
Ensembl Gene ID:
ENSAPLG00000011567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012078
149815617 - 149831204
15588