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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149817349_149820646_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149817349 - 149820646
Intron Length:
3298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TATTTGCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTCTTCTGAATA
Flanking Amino Acid:
MITDQAFVTLA
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69.9
41.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
83.6
0.76
0.9
77.5
36.5
Minor 5ss
37.4
-1.4
2.7
42.4
38.3
Minor BPS
61.9
0.37
1.4
67.18
40

Associated Gene:

Gene:
GYG2
Ensembl Gene ID:
ENSAPLG00000011567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033650
149817228 - 149831204
13977