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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149839895_149844771_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149839895 - 149844771
Intron Length:
4877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
GGTTTTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GTTTTGTTACAG
Flanking Amino Acid:
LHAVRWHQKDRGTTWKAHYV
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
79
0.65
1
72.2
42.7
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
45.1
-0.5
2.3
56.62
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011802
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012273
149837969 - 149846011
8043