About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14985824_14988928_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14985824 - 14988928
Intron Length:
3105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTCTGGTAT
5'SS Class:
weak_major
3'SS Sequence:
CCCCCCCGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTGTCTCTGACT
Flanking Amino Acid:
WLLAAVLAGKSLGQCHGSSS
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.8
0.16
1.4
61.3
39.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
67.1
0.38
0.9
60.5
29.4
Minor 5ss
42.3
-0.8
3.2
59.9
45.1
Minor BPS
65.8
0.58
1.7
83.72
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021573
14985772 - 14989164
3393