Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149923467_149923951_F

Intron Information:

Intron Rank:

148628

Intron Class:

major

Intron Phase:

Intron Coordinates:

149923467 - 149923951

Intron Length:

485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGGGTC

5'SS Class:

strong_major

3'SS Sequence:

CTGTGCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTAGAC

U12 Branch Point Sequence:

TAGACCTGAGCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.8

76.4

32.8

Major BPS

54.1

0.1

1.2

52.4

43.3

Major PPT

80.1

0.68

0.9

76.7

37.4

Minor 5ss

28.3

-2.5

3.6

40.1

46.3

Minor BPS

0.03

1.8

62.82

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030020

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025516

149923229 - 149928050

4822