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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149924115_149927628_F

Intron Information:

Intron Rank:
148629
Intron Class:
major
Intron Phase:
Intron Coordinates:
149924115 - 149927628
Intron Length:
3514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
GTGTCCCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTGTGTGTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.8
33.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
68.9
0.43
0.9
59.5
38.1
Minor 5ss
33.2
-1.9
2.8
38.8
40.3
Minor BPS
37
-0.9
2.5
55.41
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030020
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025516
149923229 - 149928050
4822
ENSAPLT00000044075
149923229 - 149928050
4822
ENSAPLT00000038312
149918687 - 149928050
9364