About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149961701_149966442_F

Intron Information:

Intron Rank:
134544
Intron Class:
major
Intron Phase:
Intron Coordinates:
149961701 - 149966442
Intron Length:
4742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGGA
5'SS Class:
major
3'SS Sequence:
TTTTATCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTATCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
62.5
38.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90
0.9
0.7
84.5
30.1
Minor 5ss
24.8
-2.9
3.1
30
43
Minor BPS
54.4
0
1.8
64.95
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018166
149961379 - 149992526
31148