About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149961701_149988697_F

Intron Information:

Intron Rank:
134551
Intron Class:
major
Intron Phase:
Intron Coordinates:
149961701 - 149988697
Intron Length:
26997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGGA
5'SS Class:
major
3'SS Sequence:
CTTTCTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTTTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
62.5
38.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81.5
0.71
0.7
74.1
31
Minor 5ss
24.8
-2.9
3.1
30
43
Minor BPS
61.8
0.37
1.5
70.41
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044512
149961379 - 150011227
49849