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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149962311_149968173_F

Intron Information:

Intron Rank:
134550
Intron Class:
major
Intron Phase:
Intron Coordinates:
149962311 - 149968173
Intron Length:
5863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
CAGTTCTCGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCGCAC
U12 Branch Point Sequence:
CAGTTCTCGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73.5
37
Major BPS
49.1
-0
1.3
60.7
37.6
Major PPT
62
0.27
1
57.9
38.3
Minor 5ss
33.8
-1.8
3
47.3
41.1
Minor BPS
48.8
-0.1
1.5
54.18
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033497
149961379 - 149969390
8012