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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149966543_149967967_F

Intron Information:

Intron Rank:
134548
Intron Class:
major
Intron Phase:
Intron Coordinates:
149966543 - 149967967
Intron Length:
1425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCAATTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
70
0.45
1.1
67.5
42.4
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
67.7
0.64
1.7
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027459
149966441 - 149972765
6325