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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149966543_149972434_F

Intron Information:

Intron Rank:
134545
Intron Class:
major
Intron Phase:
Intron Coordinates:
149966543 - 149972434
Intron Length:
5892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTACCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTGTCCTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
76.6
0.6
0.8
74.4
29.6
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
71.5
0.75
1.7
83.45
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018166
149961379 - 149992526
31148