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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149971507_150007465_R

Intron Information:

Intron Rank:
148364
Intron Class:
major
Intron Phase:
Intron Coordinates:
149971507 - 150007465
Intron Length:
35959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTCTCCTGATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
86.2
0.81
0.8
80.9
31.1
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
50.5
-0
2
66.94
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027202
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020495
149971101 - 150008116
37016