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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149972611_149988697_F

Intron Information:

Intron Rank:
134546
Intron Class:
major
Intron Phase:
Intron Coordinates:
149972611 - 149988697
Intron Length:
16087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACTTCTT
5'SS Class:
major
3'SS Sequence:
CTTTCTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTTTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
65.7
45.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81.5
0.71
0.7
74.1
31
Minor 5ss
38.7
-1.3
3.3
50.3
46
Minor BPS
61.8
0.37
1.5
70.41
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018166
149961379 - 149992526
31148