About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149988738_149992300_F

Intron Information:

Intron Rank:
134547
Intron Class:
major
Intron Phase:
Intron Coordinates:
149988738 - 149992300
Intron Length:
3563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GAGTCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.4
0.73
1
87.4
29.7
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
72.9
0.8
1.2
77.69
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018166
149961379 - 149992526
31148